rs36636287 SNP Detail

Summary

• ID
  rs36636287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTCGA GGCCAGCTGG
  TCTACAAAGT GAATTCCAGG ACAGCCTGGG CTAATAAAAA GAAACCCTGT CTAGAAAAAA
  ACAAAAAAAA CAAAACAAAA TAACAAAAAA AAGTAAACCC AAAGAAGATG CACATTCTCA
  CATATTTAAA TATTAAATGT AACTATTTTC TTCTTGATGG CTTCCTTGTG CGTGTGTTTA
  M
  GTGATCATTC TAAGTTTAAT AACTTTTCCT TTTTCTTGCT TTTAGCACAG GGGACGTGAG
  AAGAAAATCT GATCAGGGCC TCTCAACATT TCTCGGCTAT TCGGAATAAA ACCTCTGTTA
  TTTCGTTTTC CCTCATTGCT CAGCTCTGCA GACCGGAGCT TTGCAACCTC TTCCCGGTCC
  GCCAGCACTC CCCTCTGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
ss51274572	NES14276902	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	C	C	C		C	C
ss144651961	ENSMUSSNP3665015	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
rs36636287					SNP	C	C	A	C	A	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274572	NES14276902	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	212 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	571 bp upstream
Tssr114	transcription start site region 114	448 bp downstream
Tssr115	transcription start site region 115	464 bp downstream
Tssr116	transcription start site region 116	481 bp downstream
Tssr7298	transcription start site region 7298	543 bp upstream
Tssr12164	transcription start site region 12164	400 bp downstream
Tssr12165	transcription start site region 12165	424 bp downstream