rs36636682 SNP Detail

Summary

• ID
  rs36636682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140704363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTATATT ACTTTTTTAC
  AGAAATATTT TCAAATAGCT ATGTTAAAAT ACCAATAAAC CATACTCAAA CCCTGAGCGT
  ATATGACCTT AGAATACGGG GTTACTTCTT TCCCAGATGC AAGCCTGAAA ATTATTGAAA
  GTTTCACAAA CAAAAGTTTC CAGTCAAAGC TCCATCCAAC CCTTGTGACC CAGGGTTTTA
  Y
  TTTATCCATT TAGTCCTATC CAGTGCACAC TGAGAGCCAC TCTAGGACCA CATTTATATT
  CCTTAGCAAC CCCTTGAGAT GTAACGTCAG ATGACATCAA CATCTTTGTT TGGGTTTGGT
  TTGGGACACA GGGTTTCTCC GTGTAGCCCT GGCTGTCTTG GATCTTGCTC TGTACATCAG
  GCTGGTTTCA AACTCCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss50482323	NES14107135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs36636682					SNP	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50482323	NES14107135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140704363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19919	CpG island 19919	695 bp distal
Gm33560	predicted gene, 33560	within coordinates
Gm73068	predicted gene, 73068	within coordinates
Gm73077	predicted gene, 73077	876 bp upstream
Rr400707	regulatory region 400707	1119 bp downstream
Rr657851	regulatory region 657851	1599 bp distal
Rr657852	regulatory region 657852	960 bp distal
Rr657853	regulatory region 657853	386 bp distal