rs3663695 SNP Detail

Summary

• ID
  rs3663695
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31215945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTGCAG TCCTTTCCTT
  TGGAAAGAAG CCATTGTAGT TGCCGGAAAC ACATTCAATG CTGCTATAGG TCCTCTGTTC
  TTCAACCATC TGAACAAACG ATGCTGAGAT TGTAGACACT GGAGTTTCTC TGATGCAGTT
  TCCCCAGGTG ACTTTCCAGC TCCAACAGGA TACGATGCTA CTTAGGAAAG AGAAAGGGGG
  K
  GAGGGGGTTG ACTGATTGAT TCTGACTAGT GATTCTCTAA CAACCTGCCT GCTTCTCTCC
  CCATCCTGTT CATCTGAGCC AGGGGCTGTC CCTGAAGCCC AGCCTGTCCC TTGAATGTAC
  TTCCTCTTGC CTCATCCTCC CAACTCGGGT GACCAGGGCC TCATCAAGCT AGATCGTTCT
  TTATTATTTC TAGAGCTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss5039630	WI_WGS_14_26593093	WI	MOUSE	f	SNP	T		G
ss139235041	ENSMUSSNP6370151	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs3663695					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31215945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	435 bp proximal
Eaf1	ELL associated factor 1	1091 bp upstream
Gm63056	predicted gene, 63056	164 bp downstream
Mettl6	methyltransferase 6, methylcytidine	within coordinates
Tssr124943	transcription start site region 124943	360 bp upstream
Tssr124944	transcription start site region 124944	1077 bp upstream
Tssr124945	transcription start site region 124945	1109 bp upstream
Tssr127965	transcription start site region 127965	269 bp downstream
Tssr127966	transcription start site region 127966	972 bp downstream
Tssr127967	transcription start site region 127967	1004 bp downstream