rs36637912 SNP Detail

Summary

• ID
  rs36637912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27858931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATTCAC CTTGTCTCCT
  CTCCCTAACA GCTGCCGAGT GTCCTGCCCA CAGCCACTAC TCTATCTGTA CACATTCCTG
  CCAGGGCTCC TGTGCTGCAA TCTCTGGCTT CACTGGCTGC ACCACGCAGT GCTTTGAAGG
  GTGTGAGTGC GATGACCACT TCCTGCTCTC CCAGGGTGTG TGCATTCCTG CCCAGGACTG
  Y
  GGCTGCTTCT ACAATGACCA ATATATGCCG GTGAGCGGAG GGGATGGGAG GCAGTCTCTA
  AACAGGCAGT GTGGGTAGAG GGACTGGAGG GACATTCAGA GCTGCTGTGC TCTGGGCTTC
  TGTTCAAGGA CTGGGACACA GAAGGACACC ACCTGCTTGC AGCAGTGGTC GCTGTACTGA
  TCACCCCAGG CTCAGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887360	NES14907208	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36637912					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887360	NES14907208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27858931 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170293	regulatory region 170293	within coordinates
Rr380562	regulatory region 380562	1802 bp upstream
Tssr65426	transcription start site region 65426	1971 bp downstream
Tssr65427	transcription start site region 65427	1942 bp downstream
Tssr65428	transcription start site region 65428	1925 bp downstream
Tssr65429	transcription start site region 65429	1912 bp downstream
Tssr65430	transcription start site region 65430	1866 bp downstream
Tssr65431	transcription start site region 65431	1852 bp downstream
Tssr65432	transcription start site region 65432	1829 bp downstream
Tssr65433	transcription start site region 65433	1717 bp downstream
Tssr65434	transcription start site region 65434	1657 bp downstream
Tssr65435	transcription start site region 65435	1510 bp downstream
Tssr65436	transcription start site region 65436	75 bp downstream
Tssr65437	transcription start site region 65437	12 bp downstream
Tssr65438	transcription start site region 65438	1656 bp upstream