rs36638617 SNP Detail

Summary

• ID
  rs36638617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34463459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAACTTT ATATGCCCCA
  GTACAGGGGA ACGCCAGGGC CATAAAAGGG GAGTGGGTGG GTAGGGGAGA GGGGGTGGGT
  GGCTATGGGG GACTTTTGGT ATAGCATTGC AAATGTAAAT GAGCGAAATA CCTAATAAAA
  AATGGAAAAA AAAAAAAAAA AAAAAGAAAC CATCCCTAGA GGTGGGGTCA ATAACATGAC
  Y
  TTATCCCTGG GGAAACCAAC ACTTTACTTT TTAAATCATT TACAAAACTA TGATGATAGA
  TAAAAACTTT TCCAACAATA AATTTTCATA TGGCTACATG TGTGTCATCA GAGGTGGGTT
  TGGGTATATG GCAAAAACAA AGCCTTAATT AGAAAGAATT AAAATAGTTT AAATTTACAC
  ATTGAAGATT TATAAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51237552	NES14285905	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36638617					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237552	NES14285905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34463459 () rs orientation: forward

Symbol	Name	Function Class
Gm37233	predicted gene, 37233	1640 bp downstream