rs36639627 SNP Detail

Summary

• ID
  rs36639627
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:29352914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTATGAGC TAGTGTGACA
  GTCTTGGCAG TCTTGACGGG TTGCAAACAG CCATATCTAA ATGTCTGGTC TCCTCATTTG
  TAAGGACTGC CTGGAACACT CTGGGTGTGA GGGCTGGGAG AGAGAAGTCC TTTCTTATGC
  AGGTAAGGCC ATATTCTCTA TTCCCTTGTA GAATATGCAC CAAGATAGGA CACATCTTTT
  W
  TGACCTGGGA AGTTTGTTTG GTATAGCCTT GTTAATCTAC ATAATACCTT CTAGTCATAA
  TTTTTCTTTC TTGTTGAACT CACTTAGCTC ATTGCCTATC TGATCAGCAA ATAATGATAA
  TAATTAATAA TAATAATGGA TAAAATTAAG TAGAAGTTTT AAATATTGAT GACTGCATAT
  TTTATCATGC CTAAATCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52001394	NES15018909	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36639627					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52001394	NES15018909	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:29352914 () rs orientation: forward

Symbol	Name	Function Class
Gm68891	predicted gene, 68891	within coordinates
Ntm	neurotrimin	within coordinates
Tssr84200	transcription start site region 84200	754 bp upstream
Tssr84201	transcription start site region 84201	779 bp upstream