rs3663994 SNP Detail

Summary

• ID
  rs3663994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10920725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCATAG CATTCCACAA
  ACTGGCACAG GGGTTGGGGG ATAGATATCT CCATTCTCAG AAAATCGGAG CTCTCAAACT
  CAGGGCCAAA GGGCCTGTGG GGTTTCTCTC ATTTATGGTT ATCAGAAAAA CAGGGTGGAA
  TCAGCTGACC ACACCTGGAC CCCTCCTTGT ATCAACAGGC CTCACAAACA GAGGAACCCC
  R
  CGGCCACCTT TTACACTGCC TGGTACTGTA CACGGCAACC AGCTCAGAGG CTCCGCAGAA
  AGGAAAACAA GCTCTGGCCC TGTTCTGATG GTAGCCTGAT ATCGCTGTCC CTCCAGCCAG
  GGCGCGATTG TTCTCTCCCC TGTGCCCTCC CACTTCTACT CCAGGCAGTG CTGATAAGTC
  TGCATGACTC GTGTTTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5039929	WI_WGS_18_10788288	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3663994					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10920725 () rs orientation: forward

Symbol	Name	Function Class
Gm35814	predicted gene, 35814	within coordinates
Gm58912	predicted gene, 58912	within coordinates
Rr533830	regulatory region 533830	1996 bp distal
Rr533831	regulatory region 533831	within coordinates
Rr533832	regulatory region 533832	334 bp proximal
Tssr150046	transcription start site region 150046	197 bp upstream
Tssr150047	transcription start site region 150047	316 bp upstream
Tssr150048	transcription start site region 150048	343 bp upstream
Tssr150049	transcription start site region 150049	1228 bp upstream