rs3663999 SNP Detail

Summary

• ID
  rs3663999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106606789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC CGCGAAGGGC AAAAGGATCC
  Y
  GCGGCTCCCG GTGGCCTGCA GCGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5039934	WI_WGS_5_104124075	WI	MOUSE	f	SNP	C			T
ss45731256	mCV23838537	ABI	CRAMUS_MOUSE	f	SNP		T	C	T	C
ss321634536	CHEV_5_106887942	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3663999					SNP	C	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106606789 () rs orientation: forward

Symbol	Name	Function Class
Barhl2	BarH like homeobox 2	757 bp upstream
Cpgi16165	CpG island 16165	within coordinates
Cpgi16166	CpG island 16166	1131 bp proximal
Gm33151	predicted gene, 33151	within coordinates
Tssr47756	transcription start site region 47756	222 bp downstream
Tssr52338	transcription start site region 52338	969 bp upstream
Tssr52339	transcription start site region 52339	505 bp upstream
Tssr52340	transcription start site region 52340	453 bp upstream
Tssr52341	transcription start site region 52341	427 bp upstream