rs36643555 SNP Detail

Summary

• ID
  rs36643555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26299672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGACGTCGG AGCTCTCTGC TTGGTAAATA AATATTGGGG
  CTTTCTGAGC TTCTGCCAGT GATGGGTCTT AGGGTGCATG AGGCCTGTCC CCTACCTGTA
  R
  TTACCTAACT CCTGTGTCTA CCTTGACCTG CAAGCAGAGC CCTATGGCTA TGATCGTGTC
  TCTTCTGAAG GCTGAACACA TTCAGAGGGC AGAGGGATGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50513599	NES14089106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36643555					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50513599	NES14089106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26299672 () rs orientation: forward

Symbol	Name	Function Class
Rr180623	regulatory region 180623	1929 bp proximal
Rr189143	regulatory region 189143	873 bp distal
Rr366752	regulatory region 366752	1108 bp downstream
Star	steroidogenic acute regulatory protein	within coordinates
Tssr76716	transcription start site region 76716	1131 bp downstream
Tssr76717	transcription start site region 76717	983 bp downstream
Tssr76718	transcription start site region 76718	218 bp upstream
Tssr80732	transcription start site region 80732	1394 bp upstream