rs36644062 SNP Detail

Summary

• ID
  rs36644062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:58307567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTTAGA ATCTTTATCT
  GGGTTTCCTA CTTAAAATTA CATACTAATC CAATTTCTAA TTATTAAAAT TCTTACCTTA
  GTAGCTGTCT TTCCTTTATA GAACTGTTTC TAATAAGAAA ATTATATTCC TCCATTTTGG
  TATTTTTACA AGTTATTTAA AAGTTATTAT GGTTTAGAAA TTGAGAGTAT TCTCGGCATA
  Y
  TTAACCAATC TGAATATTCT CTAGTGCATT ACTGTTGACA TGGATAATTA CTAATAAATA
  AACCTATTTC CACTGTTCAA AAAAACAGGG ACTGTGATTT CTAGGAATGT AAAATCAAAA
  TATAAGATTA TAAAATCATT CTTTGAAACT ATCCTCACTT TTTCTTAAAG GATTTGTAAT
  AATCTTCAGG GAATAGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51129238	NES13857133	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36644062					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51129238	NES13857133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:58307567 () rs orientation: forward

Symbol	Name	Function Class
Gm42976	predicted gene 42976	381 bp upstream