rs36644253 SNP Detail

Summary

• ID
  rs36644253
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131424713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTCACAA TTATAGAGCC
  GTGTGTGGCT ACCAAAGGGA TAATTGCTAA TTGCCAAACA GCACACTGGG ACTTTTATTT
  ATTTCTTACC GTGACAGTTT AACGGCAGGA TGCAAAGCAA GGCATCTCAT TTGGGCATGG
  TTTGCGTAAG TCCAAAGTGC AGTAGTGTCT CCCAAGATAT TTCAGCATTG TATTGCTCAG
  K
  GTGCTGTTGC AATTGGGTGC TTCTCCATTG GAGGTGTAAA GATGTAGATG AAAAGACTTC
  CTTCTGCTCT CTATGTGACA ACCTGAGATG CTGGATAGAA CGGGCCCTAC GTTTCCCCTT
  GAATGAGTAC CTGCTCCATC TAGGGTTGTC AGCAAGGGGT CAGCATGGAG GTCACACCCT
  AATGAAGAGC TTTTGGATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51932580	NES14951492	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36644253					SNP	T	T	T	T	T	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51932580	NES14951492	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131424713 () rs orientation: forward

Symbol	Name	Function Class
Gm34645	predicted gene, 34645	1787 bp downstream
Gm44546	predicted gene 44546	1029 bp upstream