rs36644561 SNP Detail

Summary

• ID
  rs36644561
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:67103628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGATA CCAAGATCCC
  TGGCTTACCT GCTCTGGGGT TTTCTTTAGA ATGATAGTAA TATTCTCCCC AGTTTCCTTC
  TGAGTCTATT CTTAAATTAT TTTATTAACA AGACTAATAA CATCAAGAAG GGAACAAGAT
  TAATAACATC AAGAAGGGAT GCCAATTCCA CTAATAACAT CTGGGAATTC TACCAGAGCC
  K
  CTCAATTTTC CATTAACACT AATATCTATG TATTTTTTGT GTCTGTATCT ATTCGTGTAT
  GTATGCTCCA TCTATCTAAA GTCTATCTAT CCATCTGTAT ACATATCTGT CTCTTCATCC
  ACCATCCTCC ATCCCTAGTG AAGAAAAGAG GTAAATGACA AAGTTTCTGA TCAAGGCTCA
  AAATTTAATA TTAAGCACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50446886	NES13446903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36644561					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50446886	NES13446903	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:67103628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10165	CpG island 10165	1334 bp distal
Gm50164	predicted gene, 50164	within coordinates
Rr393837	regulatory region 393837	within coordinates