rs36644601 SNP Detail

Summary

• ID
  rs36644601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:103678875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACTGTTT TTTTTTTCTT
  TTGACCCTTT TTTCTGCTGA TGATCCACTA TTAGTGTTAC CTAAACATAC AGAATCTGTG
  TGTGTGTGTG TGTGTGTGTG TGACTATGAA GTTCAAAATA AGATATCTCT ACTTAGAGGC
  AGTTGTAATC CACCTAACAT GGTTATTTAG GACTATATTT ATATCTCATG GAAGGGCAGC
  R
  ATGACTCTTA GTGGCTGAAT CATCTCTTCC AAACATATTT ATTTATTTAT TTATTTATTT
  ATTTATACTT TACATTTGTG AGTGCTTTTA TTGCATGTTC ACCAGGTGTA TGCTGCATTA
  AGAAAGTCCA GAAAAGTATA GAGTCCTCAA AACTGGATAG AAGCCACATG AGTGCTGGCA
  ATCAATTCTG GTTCTTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51329716	NES14482996	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36644601					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51329716	NES14482996	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:103678875 () rs orientation: forward

Symbol	Name	Function Class
Rr371795	regulatory region 371795	920 bp upstream