rs36644871 SNP Detail

Summary

• ID
  rs36644871
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127542693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCGGTTGTG TCCTGGTCAA GGACTCTGAT AGTTAACGGT
  GGGAGGGGGA GGGGGAGGGG GAGTGTCCTG ACTCACTCAG AGTTTCTCCT GCACAGAGGC
  S
  AGTAAGCTAG TGATGTCCTA CGTGGCTGCT GTCTGTGGGA AAGGAGAGCA GGTGAACTCT
  GTGAAGGAGC AGCTGCTTCA GTCAAACCCA GTGCTGGAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947131	NES14150393	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36644871					SNP	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947131	NES14150393	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127542693 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	Coding-Synonymous
Rr441013	regulatory region 441013	1812 bp distal
Rr441014	regulatory region 441014	1889 bp distal
Rr441015	regulatory region 441015	1004 bp proximal
Tssr3395	transcription start site region 3395	1533 bp downstream
Tssr96246	transcription start site region 96246	18 bp downstream
Tssr96247	transcription start site region 96247	within coordinates