rs36645090 SNP Detail

Summary

• ID
  rs36645090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGCTAGC TTTTTGTTTC
  TGTTTCTGTT TGTTTGTTTT TCTGTTAGAC AGGGTTTCTT TGTATAACAG AGCCCTGGCT
  GTCCTGGACT TGCTTTGTAG ACCAGGCCGG TCTCAAACTC AAAGATAGCT GTATGCTGCT
  TGAGTGCTGG GATCAAAGGC ATGGACCACC AAGCCTGGCC TAGCAAACTA GTTTAATCAC
  R
  GTTCTTTCAC CAAGCCGATC ATGGGCAACT TTAAAGCAAG AAGAAAAAGA TGCAGCATAC
  TATTCATTAA AAGGAAAATA ATTTTCTGGG TTGATGGTAT GTGCCTTTAA TCCCAGCAGT
  CTGGAGGCAG AAGGAGGGTC CATATAGCAA AATCCAGGTG AGCCAGGGCT GCATAGTGAG
  ATCCTGTCGT ATTTTTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss50454691	NES14115469	PERLEGEN	MM_PANEL2	f	SNP		A	G	G	G	A		A	G		G
ss145647305	ENSMUSSNP741222	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
ss322398764	CHEV_7_117910787	CHEVERUD	SCREENING_POP	f	SNP							A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs36645090					SNP	G	A	G	G	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50454691	NES14115469	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366480 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	933 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	Noncoding-Transcript-Variant
Cpgi19579	CpG island 19579	810 bp proximal
Rr653308	regulatory region 653308	520 bp proximal
Rr653309	regulatory region 653309	1148 bp proximal
Rr653310	regulatory region 653310	1649 bp proximal
Tssr68503	transcription start site region 68503	790 bp upstream
Tssr68504	transcription start site region 68504	833 bp upstream
Tssr68505	transcription start site region 68505	865 bp upstream
Tssr68506	transcription start site region 68506	896 bp upstream
Tssr68507	transcription start site region 68507	1342 bp upstream
Tssr68508	transcription start site region 68508	1557 bp upstream