rs36645787 SNP Detail

Summary

• ID
  rs36645787
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6096407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCTATC TCCCAGGGAT
  GAACACGCAC GCCGACTGAG CTTTTGGGGT GTTGAAAAGT CAACGCCTTC GCACAGAACT
  CTCCACCCCA ACCTAGAAAT AACTGGCGTT CTGTTTTATG TCAGTCCGGA CACGCAAGCA
  CTGCTCCTTT TGCGGGCCCC GTAAGCATCC CCCCAGGCGG GATAGGGATC CCCGGCCTAT
  K
  GACTGCGCTT TCTCAGCTGG CATCCAGCTG CCTTGGCACC CAGTCCGGGG CCACTCTGCC
  TACAGACCCT AGCAACCACT CACCTGCTTT TCTTTCCCTA TAGGCCAGAA ATTTTTCCTT
  TCTTTTCTCA TTGGTCCGCG TAACTTTATC GCAACCAATC GGCGGTAGCC ACGGGAACAA
  ACTCACTCCT ACACAACCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50575700	NES13653303	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36645787					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575700	NES13653303	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6096407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	within coordinates
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1555 bp upstream
Gm59262	predicted gene, 59262	within coordinates
Rr370438	regulatory region 370438	within coordinates
Rr405816	regulatory region 405816	1896 bp downstream
Rr405817	regulatory region 405817	353 bp downstream
Rr543275	regulatory region 543275	1937 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	297 bp distal
Rr543279	regulatory region 543279	296 bp proximal
Rr543280	regulatory region 543280	635 bp proximal
Rr543281	regulatory region 543281	738 bp proximal
Rr543282	regulatory region 543282	931 bp proximal
Rr543283	regulatory region 543283	994 bp proximal
Rr543284	regulatory region 543284	1042 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	199 bp upstream
Tssr154538	transcription start site region 154538	264 bp downstream
Tssr154539	transcription start site region 154539	252 bp upstream
Tssr154540	transcription start site region 154540	644 bp upstream
Tssr154541	transcription start site region 154541	678 bp upstream
Tssr154542	transcription start site region 154542	704 bp upstream
Tssr157816	transcription start site region 157816	1476 bp upstream
Tssr157817	transcription start site region 157817	571 bp downstream
Tssr157818	transcription start site region 157818	1033 bp downstream