rs3664587 SNP Detail

Summary

• ID
  rs3664587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120546737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT CCTAGGTAGC CAGGGCAACA
  Y
  GGAGAAACCT GTCTCGAAAA ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5040523	WI_WGS_2_121672139	WI	MOUSE	f	SNP	T			C
ss45226270	mCV25281080	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147367232	ENSMUSSNP1637453	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320479587	CHEV_2_120541992	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3664587					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120546737 () rs orientation: forward

Symbol	Name	Function Class
Cdan1	codanin 1	within coordinates
Stard9	StAR related lipid transfer domain containing 9	within coordinates