rs36646047 SNP Detail

Summary

• ID
  rs36646047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66589693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAAATCAAC AATTTCAACT
  Y
  TGAATTCTTA AAAAAAAAAA TGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50450346	NES13440884	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C		T	T	C	T	C	C	C
ss147332490	ENSMUSSNP2380175	ENSEMBL	ENSEMBL_Sanger	f	SNP						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36646047					SNP	C	T	C	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450346	NES13440884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66589693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	1572 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	1982 bp upstream
Rr405709	regulatory region 405709	1797 bp upstream
Rr539737	regulatory region 539737	1421 bp proximal
Rr539738	regulatory region 539738	1769 bp proximal
Rr539739	regulatory region 539739	1823 bp proximal
Rr539740	regulatory region 539740	1982 bp proximal
Tssr151705	transcription start site region 151705	1965 bp upstream