rs36646727 SNP Detail

Summary

• ID
  rs36646727
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66481539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTTACC AAATATCGAA
  TTTTCAGATG TTTACTGATG CTCTAGAATC GTTCAAATCA TTTGAAAGAA TAGAATCCAA
  GTGGGGGGAA AACCCCAATG GGATGCTTAT GAAAATTCTT GTGTTTTATG AAGAGAAATG
  CTTTAAAATG GAAAAGAAAT TGTTTTGCCC ACATTTACTG TGAAGGGAGA AGTTATCTGT
  M
  GTTTGGAATG AATTATATCA CTGCCCTTCT CCTCTTGTTC CTCATTTAGG CCAGAGGCCC
  ATATCAAATG CATTAGATCA GAGCTTAATC ATCTTTATAA CTAGGTATAG TTATTTTTTT
  AAAGCTCTAA AGAATTTCCT AACGCAATGA CACCAGCCCC TCCGTGAATC AACTGTCATT
  CCAGGGATTT ATGGTAATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968274	NES13941302	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36646727					SNP	A	A	A	A	C	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968274	NES13941302	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66481539 () rs orientation: forward

Symbol	Name	Function Class
Rr665	regulatory region 665	1577 bp proximal
Rr811	regulatory region 811	within coordinates
Rr577849	regulatory region 577849	559 bp distal