rs3664679 SNP Detail

Summary

• ID
  rs3664679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46136820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTAGAAT TCGGGGCCAC TATACCAGGC CCAATGCTTT
  GCCATCCTTT GAAAGTCAGC AATCCACTTT GAACTACACT CACTTCTTAT CTGATTTAGT
  R
  ATGGTTAAGG TTTGGTTTCT AACCTTGGAC CAAGGTGCAT ATTTTACATA TCAAAGCAGA
  CATGGTCTTC AGGTTCTCCC AGTATCCCAT AGTCCCTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5040615	WI_WGS_4_44973717	WI	MOUSE	f	SNP		G	A
ss45716132	mCV22985047	ABI	CRAMUS_MOUSE	f	SNP	G		A	G
ss146261750	ENSMUSSNP5413208	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss321104085	CHEV_4_46149692	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3664679					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46136820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	1343 bp proximal
Ncbp1	nuclear cap binding protein subunit 1	1912 bp upstream
Rr591548	regulatory region 591548	919 bp proximal
Rr591549	regulatory region 591549	1608 bp proximal
Rr591550	regulatory region 591550	1804 bp proximal
Rr591551	regulatory region 591551	1884 bp proximal
Tssr37109	transcription start site region 37109	1664 bp upstream
Tssr37110	transcription start site region 37110	1709 bp upstream
Tssr37111	transcription start site region 37111	1757 bp upstream
Tssr37112	transcription start site region 37112	1892 bp upstream
Tssr41557	transcription start site region 41557	1536 bp downstream
Tssr41558	transcription start site region 41558	1578 bp downstream
Tssr41559	transcription start site region 41559	1847 bp downstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	within coordinates