rs36646843 SNP Detail

Summary

• ID
  rs36646843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84444095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATGGTAG AGTGAAGGAA TCAAAGTAAA AGGCCAGGTG
  ATGCTGTCTG AACCTATTTA TAGAAAATGC CCAGAAAAGG CTAGTCTGCA GACGCTTCTT
  R
  GCAGAGTAAC TGTCTGGGAG TTAGGCAGGC GATGGTTGTG GGCAGCAGGC TACTTTGTGG
  TTTGGGGGAT GGAGTTCAGG GTTTTCTCAC ATGCTAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss51971792	NES14985297	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G		G		A
ss145360687	ENSMUSSNP32372	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss322745608	CHEV_8_86241365	CHEVERUD	SCREENING_POP	f	SNP									A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs36646843					SNP	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971792	NES14985297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84444095 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			1518 bp distal
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr666292	regulatory region 666292			1908 bp distal
Rr666293	regulatory region 666293			1143 bp distal
Rr666294	regulatory region 666294			345 bp distal
Tssr78288	transcription start site region 78288			1942 bp downstream