rs36647176 SNP Detail

Summary

• ID
  rs36647176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81874297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGAGATT AGGTAGACAA
  GGGCTTTCAG GGTGTGCCTC TTCTCACCCC AGGCACCCCC AGAACCCTGC ATGCAGAGGC
  CACGTCCCCT CAGGGCATCA TGTCGATGTC TGCACATTTC TGTACATCTT ACTCACTCTG
  GAGTTCCTTT GGACTCCTTG TGGAGAAAAC GAGGAAGCAC ACCAAATATC AGACATCTGT
  Y
  AGCACTGGGA CAAGAAAGAA CATCCTCGGT GTGGGGCTTC CCTGTCTCTG GGGCTGACCT
  AAAGTCTCCA GGGCATCACA GAGCTGCTGA GACAAAAGCC TCAGGGCCTG AGCACTGGGT
  AGGAGAAAGG AGCTGGTGTT GCCTCTCCAG TTCAGCACAG ACAGGCAGGA CGGCAGGGCA
  GGGGGCTCCG TGCACATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51348633	NES13742439	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36647176					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348633	NES13742439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81874297 () rs orientation: forward

Symbol	Name	Function Class
1700097M23Rik	RIKEN cDNA 1700097M23 gene	1977 bp upstream
Mir468	microRNA 468	640 bp upstream
Mir7232	microRNA 7232	1653 bp upstream