rs36647488 SNP Detail

Summary

• ID
  rs36647488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128177978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGGGC GGTGCTTGTT
  GCTCGAGAGT GGTGCAATAA CTGAAGGATA AACTTAACAA AGTGTGAGAG GCAGAGCCCA
  GGGATTCAGT GGTCAGCTTG GGGTGGAGTT TAGAACTGCC AGACTCTGTC TGTGGCCAGT
  GCCCAAGCTA GTCGTTCTAG ACCATGGCTG GGAAGGTAGG AGCTGTGGCT GCTGTTTCCC
  R
  ACTCCTCCGG GCAGGCGCAG ACCAAAGCGA TCTATACCTC CGGAGCACAC CACATTCCCA
  CCCACCCAGC CGAGCTACGG AAACTCGCGG GGGCTCAGGG GGTCATAGTT GAAGTCCCTC
  AGTGGGATTT GGAAGGTGCG GGTCCTAGTG TGGGAGGTGG ATGGAGAGTT GACTCCGTGG
  TTAAAAGAAC CTTGCAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863566	NES14892196	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36647488					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863566	NES14892196	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128177978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	within coordinates
Gm4691	predicted gene 4691	1135 bp downstream
Gm10010	predicted gene 10010	325 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	1164 bp downstream
Rr399953	regulatory region 399953	207 bp downstream
Rr639207	regulatory region 639207	701 bp distal
Rr639208	regulatory region 639208	444 bp distal
Rr639209	regulatory region 639209	297 bp distal
Rr639210	regulatory region 639210	within coordinates
Rr639211	regulatory region 639211	481 bp proximal
Tssr63410	transcription start site region 63410	445 bp upstream
Tssr63411	transcription start site region 63411	440 bp upstream
Tssr63412	transcription start site region 63412	423 bp upstream
Tssr63413	transcription start site region 63413	380 bp upstream
Tssr63414	transcription start site region 63414	365 bp upstream