rs36647516 SNP Detail

Summary

• ID
  rs36647516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:26758535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAGGTT AGCCCAGAAA
  ACATGATCTC CTGTCTCCAA AGAGAAAAAC AAGAAACTTA GCACTGTGGC TTGAGTGACA
  GTTCTTGACA GCTACAAGAT GGAGTCCTTC TTCTTCAACT TCCCTTGATG AGGGTCTTGG
  TGACCACAGC TGAAAACATA GAATGCCCAC CACAGGAGAA CTTCCAAAGG CTTGCTCCTT
  Y
  ACTCAGAGGC AAATTCCTAC TTCAGATTGT CAGTAAAATT TCAGGAGGCA GCTTTGGGTT
  TGGTTTTGAA TTAGGCCAAC CCTGGAGCAA TTTATTTCAA ATCTGCTAGG AATGAAACCG
  CTGTGTAGGA GTGTGCAGAC TGTAGCTAAG AGTGGTCTAG GATAAAGTTG GGCTGACCAC
  GTTTTTGGCA CAGTGAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50831486	NES14195945	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36647516					SNP	C	C	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50831486	NES14195945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:26758535 () rs orientation: forward

Symbol	Name	Function Class
Arhgap18	Rho GTPase activating protein 18	within coordinates
Tssr92804	transcription start site region 92804	1805 bp downstream
Tssr92805	transcription start site region 92805	1326 bp downstream