rs36648149 SNP Detail

Summary

• ID
  rs36648149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72321943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTCTCT TTTAGGTGTA
  GGAAGTATTT CCCTAGGGAC ATACCCCAGG ACTCTCACAG CATCTCCAGG GCTGAGTGGC
  CTTATATTTA CAGTCATGCC ACAATACTCT GTTGGCCGAC CCCAGAACTG GTGTAGTGTT
  TGCCCAATGC AAACTTACTC AAAAAGAGGT TCAACAACTA GCAATCCACA GAAGAGGAAC
  Y
  AAGGTTCTGC AAATTTGCTG ACAGAGGCCA AGATCCTGAC CTTTGTACTA AACAGGTACT
  GGTTGATTTT TTTTTTTTTT TAATAATTCC TCCTCCCAGG GGAAGTTTCC TGGTGGAAGA
  CAGGCTGGAA GTAATGGTAA AGTGCAAACT GCAATACTGT CTTGTTTTTT TTTTTTGCAG
  TGTACTGCTG ATAAGATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51274574	NES14276972	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36648149					SNP	C	C	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274574	NES14276972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72321943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	1252 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	1611 bp upstream
Tssr114	transcription start site region 114	1488 bp downstream
Tssr115	transcription start site region 115	1504 bp downstream
Tssr116	transcription start site region 116	1521 bp downstream
Tssr7298	transcription start site region 7298	1583 bp upstream
Tssr12164	transcription start site region 12164	1440 bp downstream
Tssr12165	transcription start site region 12165	1464 bp downstream