rs36649393 SNP Detail

Summary

• ID
  rs36649393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116727300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCAAAC AGCTTAACAT
  TTCTCACGAG AACCAGTCTT GCCTCCAAAG GAGTCACGGG GTTCTGATGA AGCCACTACC
  TATGGAGTAT CCTTTCCCTT TCTCCTCCTA AGAGCTTGAC TTTGGAAGCA TGACATTTCC
  ATTCTTCTCC AGGATTACAG AATGCCGGAA GGGAACCGGG AACTGACCGT CACTGCATGG
  R
  TCGGATCTTA CAGTCAGTCT GTTGAAACAC AACTAAGCCC AGTCCTTTCT GGGAGCTTGG
  ATGTAAATGT TCCCTGAAAT CTCCACCCTG GATTAGATAA AACATCTACA AGCCAGAACG
  TGCTCTACAG AGAGGAATTG CCAGACACAG GGGTATTCTT GTATAATACC AATAGAGAGC
  TTTATGGAAT TCTGACGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51804044	NES14719111	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36649393					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51804044	NES14719111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116727300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16401	CpG island 16401	1764 bp proximal
Rr618510	regulatory region 618510	within coordinates
Rr618511	regulatory region 618511	618 bp proximal
Srrm4	serine/arginine repetitive matrix 4	Intron