rs36649590 SNP Detail

Summary

• ID
  rs36649590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACCCCA AAGACATCAA
  TGTCAAGTGG AAGATTGATG GCAGTGAACG ACAAAATGGC GTCCTGAACA GTTGGACTGA
  TCAGGACAGC AAAGACAGCA CCTACAGCAT GAGCAGCACC CTCACGTTGA CCAAGGACGA
  GTATGAACGA CATAACAGCT ATACCTGTGA GGCCACTCAC AAGACATCAA CTTCACCCAT
  Y
  GTCAAGAGCT TCAACAGGAA TGAGTGTTAG AGACAAAGGT CCTGAGACGC CACCACCAGC
  TCCCCAGCTC CATCCTATCT TCCCTTCTAA GGTCTTGGAG GCTTCCCCAC AAGCGACCTA
  CCACTGTTGC GGTGCTCCAA ACCTCCTCCC CACCTCCTTC TCCTCCTCCT CCCTTTCCTT
  GGCTTTTATC ATGCTAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676650	NES14820450	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	C		C	C	T	C		T
ss321815806	CHEV_6_70676721	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36649590					SNP	T	T	C	T	T	T	C	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676650	NES14820450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703711 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	within coordinates
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	within coordinates
Rr158	regulatory region 158	776 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1292 bp downstream
Rr399685	regulatory region 399685	880 bp downstream
Rr399686	regulatory region 399686	within coordinates
Tssr1880	transcription start site region 1880	123 bp upstream
Tssr56956	transcription start site region 56956	894 bp downstream
Tssr56957	transcription start site region 56957	255 bp downstream
Tssr56958	transcription start site region 56958	239 bp downstream
Tssr56959	transcription start site region 56959	221 bp downstream
Tssr56960	transcription start site region 56960	206 bp downstream
Tssr56961	transcription start site region 56961	190 bp downstream
Tssr56962	transcription start site region 56962	178 bp downstream
Tssr56963	transcription start site region 56963	131 bp downstream
Tssr56964	transcription start site region 56964	120 bp downstream
Tssr56965	transcription start site region 56965	108 bp downstream
Tssr56966	transcription start site region 56966	100 bp downstream
Tssr56967	transcription start site region 56967	80 bp downstream
Tssr56968	transcription start site region 56968	50 bp downstream
Tssr56969	transcription start site region 56969	26 bp downstream
Tssr56970	transcription start site region 56970	7 bp downstream
Tssr56971	transcription start site region 56971	2 bp upstream
Tssr56972	transcription start site region 56972	28 bp upstream
Tssr56973	transcription start site region 56973	66 bp upstream
Tssr56974	transcription start site region 56974	98 bp upstream
Tssr56975	transcription start site region 56975	131 bp upstream
Tssr61321	transcription start site region 61321	218 bp upstream
Tssr61322	transcription start site region 61322	70 bp upstream
Tssr61323	transcription start site region 61323	within coordinates
Tssr61324	transcription start site region 61324	25 bp downstream
Tssr61325	transcription start site region 61325	91 bp downstream
Tssr61326	transcription start site region 61326	126 bp downstream
Tssr61327	transcription start site region 61327	140 bp downstream
Tssr61328	transcription start site region 61328	231 bp downstream