rs3664962 SNP Detail

Summary

• ID
  rs3664962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTG TCCCGGGCAT TTAACAAGGG
  Y
  TCTGCAAATA TTTGCTAAGA TCAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5040898	WI_WGS_1_173658097	WI	MOUSE	f	SNP		T	C
ss120013123	PARCsnp_1.08829	PARC_SEQ	INBRED	f	SNP			C	T
ss146189493	ENSMUSSNP2496270	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss320124578	CHEV_1_174298736	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3664962					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	324 bp proximal
Cpgi1046	CpG island 1046	1179 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	363 bp proximal
Tssr10190	transcription start site region 10190	1868 bp upstream