rs36650557 SNP Detail

Summary

• ID
  rs36650557
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35022298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCCCAGT TTTAGAAGGG TTTAGCTGGA ACTCCAGCCC
  CGAGTCTGCA GATGCCACCC AGCGGAGCGC TCACCCCCCA AGTCACCTTC CTTGGGCAAA
  W
  AACAAAAAGT TGACACAGGA GCAGAAAGTG AGGTTATGAG TAGTCTTTGC AGGGATCTGA
  AAGCTACTAA AAAGGGGTAA CTACCTGGAC TTAGAGTGGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50670800	NES14013390	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36650557					SNP	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670800	NES14013390	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35022298 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	702 bp proximal
Rr383192	regulatory region 383192	342 bp upstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates