rs36651177 SNP Detail

Summary

• ID
  rs36651177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11338453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAACCTC AAATTTTGTT
  CCTGACATAA TAGTCCCAAA TTTTCTCCCA AGTGTGTTTC TACTCTTGGC CTTACTTCTC
  AGCTTGTCGT ACAGGAAGTC CTTAGGTACT TCCTTCAGAG GTATTTTCTA GTCAAATAAT
  GAAACCCAGT TTGAGTAATA GATGCTCACC TTGTTGTGAA GAAAGCTGTG GGACTTTCTT
  Y
  TGTGTAAGCA TTTGACATTT CTTTAATAAA TTATAAAGTT GTGGCGGGTA AGGACTATCT
  TATAGTGATA ATAATATGTC CTTCCTACCA TTCCTTTTTT TTAATTATCA AATTTATTTG
  TATGAATGTT TAGCCTGCAT GTGTGTCTGT GAACCACATG CATGTCTGAT ACCCAGGGAG
  GCCAAAAGAA ATAGTTAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50961259	NES14423924	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36651177					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50961259	NES14423924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11338453 () rs orientation: forward

Symbol	Name	Function Class
Rr462890	regulatory region 462890	1832 bp distal
Smc6	structural maintenance of chromosomes 6	within coordinates
Tssr112797	transcription start site region 112797	1157 bp upstream