rs36651310 SNP Detail

Summary

• ID
  rs36651310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117232913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCTCAG TGACTCTCAA
  ATCTGTAACT GCACAAGAGT GCACCATGGC CCATACAGAA CTGCAGGACC CGGCTCAGGC
  AGGCAGAGAG GCTCAAGGGT ACTGCTGACG GTTTCCCCAC ATAGTGCTGA CACCCCATCC
  CCCACCCCAG GAGACAGGAT CGCACTGCAC TTCCCGGTCA GGCTTTTTAT CAAGTCTGTT
  R
  TACTTTCAAC ACTTCTCAGA GCCATTTGCT CTCGTGCTCG GGGAAGAGAT CGGACGCCTA
  CCTCGTTGGC TCCCACTGAG CTGATCACAC AGCTCAGCTT CTGGTTGTCC TTAGATTCCA
  GGTAGATGGC CTGGCTCTTG TGGTACCTGC CAAAACCAGG ACACAAACAA AATATCAGGA
  CGGAGGGAGG GGCAGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51186326	NES13827116	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36651310					SNP	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186326	NES13827116	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117232913 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	87 bp distal
Rr618555	regulatory region 618555	224 bp distal
Rr618556	regulatory region 618556	1549 bp proximal
Rr618557	regulatory region 618557	1914 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron