rs3665188 SNP Detail

Summary

• ID
  rs3665188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10920931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTTACA CTGCCTGGTA
  CTGTACACGG CAACCAGCTC AGAGGCTCCG CAGAAAGGAA AACAAGCTCT GGCCCTGTTC
  TGATGGTAGC CTGATATCGC TGTCCCTCCA GCCAGGGCGC GATTGTTCTC TCCCCTGTGC
  CCTCCCACTT CTACTCCAGG CAGTGCTGAT AAGTCTGCAT GACTCGTGTT TGAGTTGGGG
  Y
  TGTCTGATCC ATTACTCGAA AGGAGGACGT GGGCTTGCTC TGGGAAGGAC GAACTCTGGT
  CTTGAGGTCT GGGAGAGAAT AGTAATGATT TATGATTAAC TGATGACTCC AAGGTTATTT
  GGTTTCACTG ACTGCTGCTG CTGCCACTGC TCCTCTGTGA ATAACCACAG AGAGAAAGGG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5041124	WI_WGS_18_10788494	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3665188					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10920931 () rs orientation: forward

Symbol	Name	Function Class
Gm35814	predicted gene, 35814	within coordinates
Gm58912	predicted gene, 58912	within coordinates
Rr533831	regulatory region 533831	within coordinates
Rr533832	regulatory region 533832	128 bp proximal
Tssr150046	transcription start site region 150046	within coordinates
Tssr150047	transcription start site region 150047	110 bp upstream
Tssr150048	transcription start site region 150048	137 bp upstream
Tssr150049	transcription start site region 150049	1022 bp upstream