rs3665243 SNP Detail

Summary

• ID
  rs3665243
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165584996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA AAAGGTGGCG ACTGGAAGCT
  K
  AAGGGGCCAA GTGTTCAAGG GCAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5041179	WI_WGS_2_166710257	WI	MOUSE	f	SNP	T			G
ss148243765	ENSMUSSNP112315	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320608641	CHEV_2_165568576	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3665243					SNP	T	T	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165584996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12714	CpG island 12714			510 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569989	regulatory region 569989			1567 bp distal
Rr569990	regulatory region 569990			842 bp distal
Rr569991	regulatory region 569991			1343 bp distal
Rr569992	regulatory region 569992			381 bp distal
Rr569993	regulatory region 569993			1771 bp proximal