rs36653338 SNP Detail

Summary

• ID
  rs36653338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37133802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAAGCA AGCGACCAAA
  CAAACAAACA AACAAATTAA CACACCATTC TAAGTGTTGG GGTTTAGGAA TAGAGAATGA
  GCTTAAGCTA TTATGCAAAG CCGACACTTT ATGAATTAAT CAGCCCCACC TATCCCCAGC
  TCTTGCTCTT TCCGTCTCTG AATCGGACTA GGTTTCTCTT AGAAATGGAA GCTTGCTCTA
  R
  CTGTCTCCTT ACCACTGCTT ACTTTCCTTA ACATGATGCT TTGCCTGTTT TAGTACGCAT
  TGCAATTCGC TTTGTGAAGT TGAGTGCTGA TCTTTGTGTC TACACCACAT TCCGTTCATT
  TGTATCTACA CTGATGGATG CATGGTGTTT TCAGCTACTG TGACTGTTGT GAGCATGGGT
  GTACAGATAT TTTCAAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51641998	NES14591023	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36653338					SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51641998	NES14591023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37133802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7042	CpG island 7042	1802 bp proximal
Gm41301	predicted gene, 41301	within coordinates
Gm41302	predicted gene, 41302	within coordinates
Gm63629	predicted gene, 63629	422 bp downstream
Rr714	regulatory region 714	805 bp proximal
Rr302626	regulatory region 302626	199 bp proximal