rs3665342 SNP Detail

Summary

• ID
  rs3665342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58662254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGT TCCCGAACGA CATATACCCA
  R
  GCTACCCAGA ACGTCCGGGT CGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5041281	WI_WGS_19_58732366	WI	MOUSE	f	SNP			A	G
ss44987580	mCV25001642	ABI	CRAMUS_MOUSE	f	SNP	A	A		G	A
ss146566705	ENSMUSSNP5530676	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss325872640	CHEV_19_58748312	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3665342					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58662254 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	747 bp proximal
Tssr5571	transcription start site region 5571	695 bp downstream
Tssr157265	transcription start site region 157265	1991 bp downstream
Tssr157266	transcription start site region 157266	737 bp downstream
Tssr157267	transcription start site region 157267	718 bp downstream
Tssr157268	transcription start site region 157268	664 bp downstream
Tssr157269	transcription start site region 157269	71 bp downstream
Tssr157270	transcription start site region 157270	within coordinates
Tssr157271	transcription start site region 157271	1234 bp upstream
Tssr157272	transcription start site region 157272	1245 bp upstream
Tssr159958	transcription start site region 159958	1956 bp upstream
Tssr159959	transcription start site region 159959	685 bp upstream
Tssr159960	transcription start site region 159960	637 bp upstream
Tssr159961	transcription start site region 159961	1326 bp downstream