rs3665357 SNP Detail

Summary

• ID
  rs3665357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110191230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA AGTATATTTA AGGTGGTGAT
  R
  AATATTGGCC CAGGGAAGAA TTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5041296	WI_WGS_2_111302121	WI	MOUSE	f	SNP	G			A
ss147209369	ENSMUSSNP2298147	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320456749	CHEV_2_110201042	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3665357					SNP	G	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110191230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12041	CpG island 12041	1728 bp proximal
Fibin	fin bud initiation factor homolog (zebrafish)	40 bp downstream
Gm30319	predicted gene, 30319	within coordinates
Rr55365	regulatory region 55365	within coordinates