rs36653725 SNP Detail

Summary

• ID
  rs36653725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113365061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCTGCT CTCAGGGCCT
  AAGTCTCGGG CTCCTTGCTG GTCCTCTAGC GTGATATGTT ATATGGTGGC CTGGTAAGAG
  GCAGCGGGCC AGCACAGCAA AGGTGGCCTG CGGGGATCTG CTTGTCTATA AATAAATGAT
  TACGGTGTGT GGCGCTAGTG CACGTGGTAG ACTGATGCCG CCGCGGGGAA ACCTTGCAGC
  R
  GCGCAGCCTG GCACTGAGTA GGTTTGCAAC AAAAGTTAAG TTGGCAGGCT TTCCCTCCTC
  AGAGCACTGT GGTCCACAGG ACCCAAGCTG GAACTGGATA CCGAGGAAGC AGCCTCGTTG
  GTGGCAGGGT AGATTGAGCC AGCACGTGTC TGCGTATCCC GGCTCTCTCC CACCAGACCC
  TGGGAATCCA GCTTCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50460413	NES14119727	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36653725					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460413	NES14119727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113365061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	within coordinates
Rr653859	regulatory region 653859	within coordinates
Rr653860	regulatory region 653860	1865 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	174 bp upstream
Tssr68625	transcription start site region 68625	29 bp downstream
Tssr68626	transcription start site region 68626	13 bp upstream
Tssr68627	transcription start site region 68627	82 bp upstream
Tssr68628	transcription start site region 68628	201 bp upstream
Tssr68629	transcription start site region 68629	220 bp upstream
Tssr68630	transcription start site region 68630	259 bp upstream
Tssr68631	transcription start site region 68631	295 bp upstream
Tssr68632	transcription start site region 68632	417 bp upstream