rs3665428 SNP Detail

Summary

• ID
  rs3665428
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC AAAAGGAAGG TTAGAGGCTG
  K
  CTAGATGACA CTCACGCAGC AAGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5041367	WI_WGS_1_173658149	WI	MOUSE	f	SNP		T	G
ss120009840	PARCsnp_1.18998	PARC_SEQ	INBRED	f	SNP			G	T
ss120013125	PARCsnp_1.08830	PARC_SEQ	INBRED	f	SNP			G	T
ss146189497	ENSMUSSNP4636892	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss320124579	CHEV_1_174298788	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3665428					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	272 bp proximal
Cpgi1046	CpG island 1046	1127 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	311 bp proximal
Tssr10190	transcription start site region 10190	1816 bp upstream