rs36654546 SNP Detail

Summary

• ID
  rs36654546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:89819234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTAACC TGGATTACCT
  GGAAGAACCC TATCTAATCT TCATTTGCTA AAAGCACAGA GGATAACTGT TGAGATGTAA
  GGTTAAAAAA TGAAATCTAC CATTTCTTGA CTTTGAGGAT GGAGGACAAA ATACACAATA
  CAGATGTTGA ATTCTTAGAG CCTAGGACTA TTTCATACAT ATATGAGCAC CAGAGAAATG
  R
  CATCAGTTCT ATACTTTGAA GCTCTGAATC TCACAAAAAT CATGGCTAAG CTAAAGTAAG
  CTGAAGATTC CCTGAGTCCT ACAGAAAGAA GCACAAGGAT GTTGACTCCT GGGTTTGAGT
  GACATTTCAG GCCTTCTGAT GAACAGAACT GAAAGATAAT GAATTTACTT TGCTTTAAGC
  TACTGTGATG ATGATTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50572552	NES13656616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36654546					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50572552	NES13656616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:89819234 () rs orientation: forward

Symbol	Name	Function Class
Gm41800	predicted gene, 41800	1822 bp downstream