rs36654688 SNP Detail

Summary

• ID
  rs36654688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55377964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCAGTC TGAAAGCCTG
  TGCGCCTCTG TCGTGGATCG CCTTTCATTT AAAGGACAGC ACGCACAGCT GAGGGACAAT
  GTAAACAGCG CAGCTGTTCC GAGAACTTGA TTTTAGTTTG ACTTTAGTGA AGAAGTTTCA
  AAATGTGAAG GGAAGCCCTG CTGGGAAGCT GCCCCTAAGC TGATCATCCT CTTGGGTGTA
  Y
  ATTTCCTCTG AAAAAATGAA GCGGTTGCTT CCACTGCTTA GTGCAGAGTG TGCAGGGTTT
  CATGCCCATT GTGACATTTT GTTTCCCTGT TTAGCTCTAG AATTCCCCCA AATTGTTTCT
  TATTTAAATA CTTTATTCTT CACATGTGTA GCATGCTTTT ATTTTTGCCA TCATACTATT
  AACATAGAGG AAGATCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51220882	NES14295788	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36654688					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51220882	NES14295788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55377964 () rs orientation: forward

Symbol	Name	Function Class
D19Mit35	DNA segment, Chr 19, Massachusetts Institute of Technology 35	1797 bp distal
Vti1a	vesicle transport through interaction with t-SNAREs 1A	within coordinates