rs36656177 SNP Detail

Summary

• ID
  rs36656177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:69469634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAGCCTT TTTGTGTTTC ATGTGACACA
  TTCAAGTTAA TTTTAATGAT GTAATTTAGA CTAAAACATC TTAGAATTGA GCTGTCTCTG
  CAGGAAGAAT ACTAAATTTT CCAAATAAAT TCCCACACTA TGTGAAATAT TTGATTAGTG
  Y
  ATCTTATTTG ACATGAATCC TGCCTCCACT Cttcccctct gtctcctccc cttccccctt
  tttcccttcc tctccccttt cccttctctt cccttccttc cctcctttcc cttccctctc
  tttcaactcc cctcccttct ctctgttcct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51265538	NES14271289	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C		C	C	C	C		T
ss319781364	CHEV_1_69477049	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36656177					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51265538	NES14271289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:69469634 () rs orientation: forward

Symbol	Name	Function Class
Gm28497	predicted gene 28497	751 bp upstream
Gm69966	predicted gene, 69966	within coordinates