rs36658256 SNP Detail

Summary

• ID
  rs36658256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98979240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGTGCA GCTACACTGA
  TACGCTGGTA AGTGATAGGA TTTTTCATTT CCACTGTACA GGTGGCCACA CCCCTAAACA
  CCGCTGCACA ATTATGCAGA ATTGCACGCA GTATCTCGGA CAGCATTTTT CAAATATCAG
  CTTTTCGTTC GAACTTACAA ACAAAACACA GCATCTGCTT TTGCCTGATA GAAAGTATTT
  Y
  GATAGGAGAA ATTCTTGGTA CAGGCCTTCT TGCCCTCCAT GCCTACAAGC TCTATATATG
  GAAATATATA GGAAAGAGTC CAAAACTAGT AAACAGGAAA GAAAAAGTGG TTCATTTGAG
  GAGCCTTGTA TACTCCATTT CTCAAGCAGA CACTAGCAAT ACTGTTTCTG GGTGCAACGG
  AACCAACAAA TGGCTTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51381557	NES13732407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36658256					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51381557	NES13732407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98979240 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635315	regulatory region 635315			228 bp distal
Tssr57961	transcription start site region 57961			937 bp upstream