rs36658406 SNP Detail

Summary

• ID
  rs36658406
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70871730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGACTGT GGAGGTTGGC
  CTCTGGTCTT CCCCACAACA CACACACACA CACACACACA CACACACACA CACACACACA
  CATCCCTGTT CCATCATGGT GGAGATGCAG TTGAGGGAAG AGCACTTATC AGAAAGGATG
  CTTTTGATTG AACAAAGAAG TCAATATGCT TTAGTTTGAG TTGAAGTATT TAAGCTATGT
  M
  ACAGGACCCA AGATCAGGAG CCAGCAGTCC TGTAGGCAGA GGCGACTCAG GGAGCAGGCT
  GGCATCAAGA CTCACTCTAT TCTTCCTGAC TCCCCATTTG AGCTTTCTTT GTTTTAATGG
  TCCACGTGGA TAAAGAAAAT AAAGTCTTTA TTCTGTAGCA CATGCCCAGC ATGTTTGGGA
  TTTTGACACC TGGAGAGTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50736522	NES14247205	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36658406					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50736522	NES14247205	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70871730 () rs orientation: forward

Symbol	Name	Function Class
Rr682460	regulatory region 682460	1417 bp distal
Rr682461	regulatory region 682461	602 bp distal
Rr682462	regulatory region 682462	614 bp proximal
Rr682463	regulatory region 682463	1744 bp proximal