rs36659301 SNP Detail

Summary

• ID
  rs36659301
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82986521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGAGCA TCCCACAGTG
  AAGCTAGTGG GTCCTAGTGG GTCTCCTGCA GGGGTCGTGT GGGGGTCAGG GTGGGGCTGC
  TGCAGGTCTT TGGAGGGAGT CCCAAGCCCC AGGGCACAGG GATAAAGGAC AGAGTAAGGC
  TGGGCTGTGC AAACCTCCTT TCTGCCTTTG TGTTTTCAGC CTTTAAGTGG AATCAGTTCA
  M
  CCTCCTGGGC CACAGTTTTG GTGAGTCAGC CTAAGGCGGA ACCTGAGTTC GGGGGGAGAG
  CTGTAGGAAA GAGAGAACTT GACACTGTGG TACCTGGTGC CTTTCCCTGC CCCTCTGAGG
  AGAGGGGTGA GAGAGTCATC TAATGCTTAC CGTACAGTTC TAGAGACCGA GTCTCAACTC
  CATGGTGGGA AAGGAACTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51727770	NES14564602	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36659301					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51727770	NES14564602	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82986521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	1829 bp distal
Gm17206	predicted gene 17206	within coordinates
Rr308146	regulatory region 308146	121 bp distal
Rr312184	regulatory region 312184	1320 bp distal
Rr404540	regulatory region 404540	2000 bp downstream
Serhl	serine hydrolase-like	within coordinates