rs36660090 SNP Detail

Summary

• ID
  rs36660090
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10612441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCCTTG GTGGTGCGGG
  ACCCCCTCCG TTTCTGCACA CGTTGCTTTG GGGTTGGGGG TTTTCTCAGT GTCTCTTGCT
  CTCTGCACCC GGTGGACCTT GGAGCCACCG GTGGCTCAGG GTTATGCTTT GGTATCTGCG
  CATGTGTGCA CAGGCCGGGG AGGCGGGAGG CCGCAGGCGA CAGGCGGGAG GCGTGTCTTT
  M
  CAAACCCAAT CATTTTCCCT AAGTTTGTCT TAGTCCTCTA CCACTAAGGG GTGATGAGGG
  AGTGGTGATC GTGTGTGCGT GATGCTTATA GCAAGGGTAC ACGTTGTCAG CGGGTGGCCT
  GGCCCACGGC CACATCTTCC CAGGGGCGCT CAGAGGGGCT GCCCTGGAGG AAGAGCTTAC
  CGCCCAGCAC GTGGGTTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601050	NES13642637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36660090					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601050	NES13642637	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10612441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	384 bp distal
Cpgi10617	CpG island 10617	within coordinates
Rr362969	regulatory region 362969	within coordinates
Tssr155079	transcription start site region 155079	832 bp downstream
Tssr155080	transcription start site region 155080	765 bp downstream
Tssr155081	transcription start site region 155081	753 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates