rs3666055 SNP Detail

Summary

• ID
  rs3666055
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG ACAAAACAAA AATCCTGCAG
  W
  TTGCCCTCAG CAGTGACACT GAAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5041999	WI_WGS_1_173658254	WI	MOUSE	f	SNP	A	T
ss120009842	PARCsnp_1.18999	PARC_SEQ	INBRED	f	SNP		T	A
ss120013128	PARCsnp_1.08831	PARC_SEQ	INBRED	f	SNP		T	A
ss320124580	CHEV_1_174298893	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3666055					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	167 bp proximal
Cpgi1046	CpG island 1046	1022 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	206 bp proximal
Tssr10190	transcription start site region 10190	1711 bp upstream
Tssr10191	transcription start site region 10191	1922 bp upstream