rs36661749 SNP Detail

Summary

• ID
  rs36661749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8996699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGTGCA TTGTCTCAGG
  TGTGAGTGTA TGCCTGGGTA TGCACACACA AACATATGGG TGTGAGAGTG TAGATTTCAT
  ACTTAACTTT ATATCTCAGA TTGTGCCCAG GAATCCACTT CTTCAAGTCT ACATCTTTAT
  GCCAGCTTTA TCAAATAAAA CCCAAAATAT AATACAAAAA ATTCATTTGA ATTAGTCACA
  R
  GAATTACAAA GGTGAAGTGA TATATGCATT TCATGTGTTT TCAGAAATGA AAATATGCTT
  GGGAAATTGT CAATTGCCTT AGGATGAAAG AAGAAAACAA GAAGAGACAC ATCTCCCTGC
  CTTCTAGATA TCATAAGGAG GCAACCTTAT TAGGGTGTTT TATATCAGTT TCCAAATTCA
  AGCAGAGCGT CTCGCTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51571822	NES14613455	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36661749					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51571822	NES14613455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8996699 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3l	RAN binding protein 3-like	734 bp upstream
Rr499127	regulatory region 499127	297 bp proximal
Tssr130603	transcription start site region 130603	714 bp upstream
Tssr130604	transcription start site region 130604	728 bp upstream
Tssr130605	transcription start site region 130605	748 bp upstream
Tssr130606	transcription start site region 130606	781 bp upstream
Tssr130607	transcription start site region 130607	1073 bp upstream
Tssr130608	transcription start site region 130608	1104 bp upstream
Tssr130609	transcription start site region 130609	1174 bp upstream