rs36663172 SNP Detail

Summary

• ID
  rs36663172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38352763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGTTTG TTTTTGGTTT
  TTGGTTTGTT TGTTTGTTTT TTTCGAGACA GAATTTCTCT GTGTAGCCCT GGCTGTCCTG
  GAACTCACTT TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCCACCTGCC TCTGCCTCCC
  AAGTGCTGGG ATTAAAGGAG CGTGGCATCA CCACCCTCCA TCACAAGGCA GAGTAGGATG
  R
  ATGCTGTGCT GCAAACCCCC AGGTCACTGA ATGTGAGGCT AATGGGAACA CCAAGCTCTG
  AAAACTTACT AGGTAAGTTT TAAATAATAT GAAAACATAA GCAGAATGTG CCTGTTCATA
  GGATGGGATG GAATTCACCC AGAAAAAGAA GCAATGTTCT CACAACCTGA GCCCAGTCAC
  CAGAATCCAT ATAAAAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss51288145	NES13774285	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs36663172					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288145	NES13774285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38352763 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	1293 bp proximal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	979 bp upstream
Rr144024	regulatory region 144024	1116 bp distal
Rr146156	regulatory region 146156	837 bp proximal
Tssr55644	transcription start site region 55644	906 bp upstream