rs36663818 SNP Detail

Summary

• ID
  rs36663818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162952267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGGTCT AGAGAAAGCA
  CACTCCAAGT GAGTACCAGG ATTCTACCTT GAAGGTAGAG ACATTCAGGA AATGCAAGCA
  AAGTAGAGAG AAGAAAGCTG TAAGCCCTGG TACTCTGGGA GCTGCCTGGC TGAAAAACAA
  TGAAGTCATT AAGTCTATAA TTTTCTAACG AATTCAGTGA GAAATTCTGC ATGGTAACCT
  Y
  CTTCTTAAAT AGAACAAGAA CAAAAATAGC CTAGTTCAAC AATCGTTTTC AACACTTTTA
  ATATTGTTGA CCTTGTTTTC TTTGATAGCT ATTGCTCTTG CCTAAAAGCT GCTTTTCATC
  TTACCGTTAT TTTTGCACTA ATAGTTGGAT TCCCAGTTTC AGGTAGAAAT GCTTTTTAGG
  CATGTGTTGG AGCTGGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51394908	NES14460307	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36663818					SNP	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51394908	NES14460307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162952267 () rs orientation: forward

Symbol	Name	Function Class
D1Mit314	DNA segment, Chr 1, Massachusetts Institute of Technology 314	1223 bp proximal
Rr372359	regulatory region 372359	1385 bp downstream
Rr422057	regulatory region 422057	1533 bp proximal