rs3666517 SNP Detail

Summary

• ID
  rs3666517
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121127137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA AAGATAAAGG GGAAAAAAAA
  M
  CCGGCAATTC CCTTCATTGG AAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5042466	WI_WGS_2_122263121	WI	MOUSE	f	SNP				A	C
ss37645894	NES09021312	PERLEGEN	MM_PANEL2	f	SNP			A					C	A	A	C		A
ss45258604	mCV23082178	ABI	CRAMUS_MOUSE	f	SNP	A	A			C	A
ss147383153	ENSMUSSNP4391155	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A				A
ss320482568	CHEV_2_121122392	CHEVERUD	SCREENING_POP	f	SNP							C					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3666517					SNP	A	A	A	A	C	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645894	NES09021312	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121127137 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			960 bp proximal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			957 bp proximal
Gm14978	predicted gene 14978			648 bp upstream
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			1358 bp downstream
Rr563799	regulatory region 563799			1192 bp distal
Rr563800	regulatory region 563800			659 bp distal
Rr563801	regulatory region 563801			158 bp distal
Rr563802	regulatory region 563802			850 bp proximal
Tssr19740	transcription start site region 19740			1170 bp downstream
Tssr19741	transcription start site region 19741			1936 bp upstream